| 1 | Leo Borromeo | 25.68 | 26.76 | 27.39 26.82 27.96 26.07 25.68 |
| 2 | Miguel Gonzaga | 28.44 | 33.97 | 35.71 34.39 34.36 28.44 33.17 |
| 3 | Brian Acuña | 33.20 | 38.68 | 37.77 40.53 33.20 39.98 38.28 |
| 4 | Gian Jozsef Pascual | 33.80 | 38.77 | 38.37 38.03 33.80 43.71 39.91 |
| 5 | Kirby Jay Caragan | 36.16 | 40.38 | 45.68 36.16 38.15 50.18 37.32 |
| 6 | Gabriel Angelo V. Hilado | 38.23 | 42.28 | 43.44 40.86 42.53 45.60 38.23 |
| 7 | Royce Judill D. Pastrano | 39.92 | 48.30 | 47.42 39.92 52.09 54.68 45.38 |
| 8 | Justin Paul Cañares | 42.94 | 49.15 | 48.57 47.52 42.94 51.37 55.20 |
| 9 | Nathan Daniel Chik | 44.33 | 49.43 | 55.84 44.33 53.75 46.33 48.21 |
| 10 | Theone Niño Gica | 47.78 | 50.42 | 47.78 59.33 49.87 52.59 48.81 |
| 11 | Chrisgel G. Tubianosa | 43.90 | 51.30 | 52.97 49.23 51.71 59.94 43.90 |
| 12 | Ayle Jan C. Abelo | 45.60 | 51.87 | 48.50 54.90 53.58 53.52 45.60 |
| 13 | Alyssa Belle Yu | 48.67 | 58.66 | 48.67 1:10.24 1:04.78 55.22 55.98 |
| 14 | Inna Perez | 55.19 | — | 55.19 1:09.42 — — — |
| 15 | Ivan Keith Cariaga | 56.01 | — | 56.01 56.24 — — — |
| 16 | Luke Dawson Chik | 58.18 | — | 1:00.81 58.18 — — — |
| 17 | Robstark Aldrei Ensomo | 1:03.05 | — | 1:03.59 1:03.05 — — — |
| 18 | Keifer Matthew Flores | 1:04.44 | — | 1:04.44 1:07.35 — — — |
| 19 | Railee Diocampo | 1:13.77 | — | 1:16.65 1:13.77 — — — |
| 20 | Miguel Taruc | 1:17.86 | — | 1:17.86 1:21.29 — — — |
| 21 | Fibbo J. Espinosa | 1:22.48 | — | 1:22.48 1:40.15 — — — |
| 22 | Elvin Cale C. Celestino | 1:26.13 | — | 1:26.13 1:32.26 — — — |
| 23 | James Paul S. Parrilla | 1:33.95 | — | 1:36.67 1:33.95 — — — |
| 24 | Mark Kevin L. Paragados | 1:48.05 | — | DNF 1:48.05 — — — |
| 25 | Wesley Jessen B. Dicdiquin | DNF | — | DNF DNF — — — |
| 25 | Keith Rogelio C. Sison | DNF | — | DNF DNF — — — |