| 1 | Ivan Lew Yi Wen (刘义文) | 55.80 | 56.85 | 55.80 58.69 55.92 56.11 58.51 |
| 2 | Leow Yi Jun (廖艺畯) | 1:06.98 | 1:19.73 | 1:21.75 1:16.57 1:20.87 1:24.19 1:06.98 |
| 3 | Tee Kai Yang | 1:14.53 | 1:19.88 | 1:14.95 1:14.53 1:15.96 1:28.72 1:55.05 |
| 4 | Mohd Ashroof Bin Masri | 1:09.35 | 1:21.85 | 1:25.91 1:09.35 1:20.70 1:22.21 1:22.65 |
| 5 | Armando Dian | 1:13.27 | 1:23.03 | 1:25.31 1:13.27 1:17.52 1:26.26 1:29.12 |
| 6 | Hadif Hary Bin Hasfia | 1:17.29 | 1:31.73 | 1:17.29 1:37.39 1:27.58 1:32.67 1:34.93 |
| 7 | Jonathan Onol Moloyos | 1:31.71 | 1:38.76 | 1:31.71 1:49.10 1:36.23 1:43.76 1:36.30 |
| 8 | Voon Wu Han | 1:44.01 | 1:47.27 | 1:45.28 1:51.84 1:44.69 2:03.79 1:44.01 |
| 9 | Muhd Hamizan Bin Musa | 1:38.05 | 1:59.49 | 1:53.02 1:38.05 2:16.08 2:03.36 2:02.09 |
| 10 | Gwee Jia You | 2:05.63 | 2:12.25 | 2:12.98 2:12.91 2:16.44 2:05.63 2:10.87 |
| 11 | Marlon Jemron James | 2:02.12 | 2:20.95 | 2:30.53 2:15.04 2:30.30 2:02.12 2:17.51 |
| 12 | Hilarry Henry | 2:36.97 | — | 2:55.02 2:36.97 — — — |
| 13 | Mohd Al Hanafi Bin Jamian | 3:01.98 | — | 3:29.42 3:01.98 — — — |