| 1 | Pedro Azevedo | 43.87 | 44.35 | 44.62 44.35 43.87 45.28 44.08 |
| 2 | Tiago Morais | 53.31 | 56.07 | 58.57 53.31 1:01.92 54.82 54.82 |
| 3 | Eduardo Pires | 1:04.61 | 1:20.53 | 1:04.61 1:26.18 1:25.50 1:20.24 1:15.85 |
| 4 | Carolina Pereira Dias | 1:09.11 | 1:22.93 | 1:09.11 1:18.15 1:23.87 1:26.76 1:26.87 |
| 5 | Carolina Cunha Simão | 1:18.41 | 1:24.88 | 1:18.41 1:27.29 1:21.09 1:29.40 1:26.25 |
| 6 | Vasco Vasconcelos | 1:06.28 | 1:26.95 | 1:32.48 1:21.11 1:36.34 1:06.28 1:27.25 |
| 7 | Marta Fernandes Cid | 1:17.92 | 1:32.55 | 1:38.34 1:36.90 1:17.92 1:33.88 1:26.88 |
| 8 | Rui Alexandre Reis Lopes | 1:32.10 | 1:40.05 | 1:44.62 1:46.50 1:34.72 1:40.80 1:32.10 |
| 9 | Anton Duchesne | 1:42.61 | 1:58.39 | 2:02.05 1:42.61 1:55.65 2:05.87 1:57.47 |
| 10 | José Henrique Ribeiro dos Santos Medeiros da Silva | 1:50.56 | 1:59.29 | 2:01.14 1:57.67 2:07.13 1:50.56 1:59.05 |
| 11 | Miguel Gaspar Faria Maia | 1:18.76 | DNF | 1:18.76 DNF DNF DNS DNS |
| 12 | António Gomes | 2:40.35 | — | 3:08.45 2:40.35 — — — |
| 13 | Rodrigo Xavier de Aquino Tavares | 3:22.79 | — | 3:22.79 3:32.52 — — — |