| 1 | Ang Chin Xiang | 47.71 | 49.15 | 49.62 53.59 47.71 49.03 48.79 |
| 2 | Muhammad Razin Bin Roslan | 50.82 | 56.24 | 58.11 51.96 1:05.42 58.65 50.82 |
| 3 | Ng Jia Quan (黄佳铨) | 47.43 | 56.77 | 1:09.13 57.46 51.16 47.43 1:01.68 |
| 4 | Muhammad Fitri Hakim Bin Dzulkarnain | 54.08 | 59.96 | 54.08 1:03.86 57.84 1:01.44 1:00.61 |
| 5 | Hill Pong Yong Feng | 54.46 | 1:01.12 | 1:00.92 1:02.06 1:01.60 1:00.85 54.46 |
| 6 | Ephraim Lim Shao Liang (林绍良) | 54.38 | 1:06.19 | 1:11.88 1:03.60 54.38 1:03.09 1:12.18 |
| 7 | Muhammad Shahir Bin Shuhaidi | 1:09.62 | 1:15.95 | 1:25.28 1:20.44 1:09.62 1:16.98 1:10.44 |
| 8 | Gregory Soo Jo-Huang (苏祖煌) | 1:09.86 | 1:16.31 | 1:13.97 1:34.91 1:09.86 1:23.79 1:11.16 |
| 9 | Mohamad Adrian Syahirin Bin Mohd Faizal | 1:11.26 | 1:16.85 | 1:23.96 1:20.30 1:14.88 1:11.26 1:15.37 |
| 10 | Leow Yi Jun (廖艺畯) | 1:13.29 | 1:17.26 | 1:35.99 1:21.10 1:13.29 1:14.70 1:15.99 |
| 11 | Isabelle Oan Yoong Ru | 1:12.44 | 1:19.53 | 1:15.50 1:29.41 1:12.44 1:24.52 1:18.58 |
| 12 | Hishwararao Krishnamorthy | 1:16.07 | 1:20.04 | 1:22.16 1:16.07 1:21.00 1:18.39 1:20.74 |
| 13 | Boying Li (李博莹) | 1:15.17 | 1:20.81 | 1:15.17 DNF 1:18.73 1:21.84 1:21.87 |
| 14 | Ahmad Kamil Ihsan Bin Ikhwan | 1:15.34 | 1:22.13 | 1:18.09 1:15.34 1:19.98 1:32.41 1:28.31 |
| 15 | Wong Ming Liang (黃泯量) | 1:19.64 | 1:23.46 | 1:24.24 1:33.95 1:22.13 1:24.01 1:19.64 |
| 16 | Eng Dickson (黄迪胜) | 1:29.80 | 1:36.97 | 1:40.10 1:38.64 1:29.80 1:32.17 DNS |
| 17 | Nur Faris Danial Bin Nur Azam | 1:27.25 | 1:37.65 | 1:41.29 1:29.14 1:27.25 1:42.53 1:50.18 |
| 18 | Dylan Ng Xu Yang | 1:40.39 | 1:48.41 | 1:48.72 1:50.92 1:47.81 1:48.69 1:40.39 |
| 19 | Toh Yong Cheng | 1:59.38 | — | 2:03.49 1:59.38 — — — |
| 20 | Lao Jia Rong | 2:00.66 | — | 2:00.66 2:16.40 — — — |
| 21 | Malcolm Wong | 2:01.19 | — | 2:04.33 2:01.19 — — — |
| 22 | Danish Adam bin Alemi | 2:12.57 | — | 3:52.96 2:12.57 — — — |
| 23 | Jacky Tan Jie Qi (陈杰祺) | 3:14.73 | — | DNF 3:14.73 — — — |
| 24 | Ter Chen Yang | 3:30.84 | — | 3:30.84 3:40.66 — — — |