| 1 | Ivan Lew Yi Wen (刘义文) | 1:00.73 | 1:15.77 | 1:17.46 1:16.48 1:13.37 1:00.73 1:40.61 |
| 2 | Teh Keng Foo (郑庆富) | 1:17.66 | 1:28.13 | 1:44.36 1:17.66 1:27.09 1:22.01 1:35.29 |
| 3 | Mohd Ashroof Bin Masri | 1:21.71 | 1:28.76 | 1:21.71 1:31.43 1:31.70 1:23.15 1:32.13 |
| 4 | Muhammad Razin Bin Roslan | 1:25.76 | 1:36.25 | 1:44.24 1:41.44 1:25.76 1:29.88 1:37.43 |
| 5 | Leow Yi Jun (廖艺畯) | 1:37.27 | 1:43.65 | 1:39.72 1:37.27 1:43.31 1:47.92 2:00.61 |
| 6 | Sean Then (邓宇恒) | 1:46.95 | 1:52.23 | 2:01.15 1:50.81 1:52.15 1:46.95 1:53.73 |
| 7 | Muhammad Haziq Noreffendi | 1:41.44 | 1:59.14 | 2:02.63 2:07.27 1:47.81 2:06.97 1:41.44 |
| 8 | Adam Wong Wei Jiang | 1:39.94 | 2:00.76 | 2:02.66 2:08.32 DNF 1:51.30 1:39.94 |
| 9 | Lim Teik Han | 2:04.25 | 2:12.34 | 2:16.73 2:04.25 2:22.82 2:13.34 2:06.96 |
| 10 | Ng Wai Hoe | 1:57.07 | 2:14.99 | 2:12.97 1:57.07 2:08.03 2:23.98 2:25.79 |
| 11 | Sulaiman Elias | 2:05.19 | 2:16.94 | 3:11.04 2:06.14 2:32.88 2:05.19 2:11.80 |
| 12 | Luqman Hakim Bin Hairil Azli | 2:13.02 | 2:24.02 | 2:24.14 2:33.74 2:14.18 2:13.02 2:36.49 |
| 13 | Ooi Zong Xin | 2:24.17 | 2:31.56 | 2:24.17 3:06.88 2:33.34 2:37.16 2:24.17 |
| 14 | Muhammad Syahmi | 2:14.92 | 2:33.19 | 2:44.03 2:14.92 2:20.24 2:41.11 2:38.21 |
| 15 | Ahmad Firas | 2:26.64 | 2:42.14 | 2:56.15 2:26.64 2:50.35 2:44.98 2:31.10 |
| 16 | Irfan Bin Aris | 2:19.66 | DNF | 3:32.43 2:19.66 3:00.85 DNF DNF |
| 17 | Tan Wei Ken | 2:29.35 | DNF | 2:29.35 DNF 3:31.98 DNS DNS |
| 18 | Jared Tee Wei Jin | 2:36.76 | — | 2:36.76 3:02.33 — — — |
| 19 | Nabil Nur Aiman Bin Jasman | 3:26.73 | — | 3:26.73 DNF — — — |
| 20 | Tock You Bin | 3:26.82 | — | 3:26.82 DNF — — — |
| 21 | Hoo Jun Sheng | 4:04.97 | — | 4:04.97 4:05.81 — — — |
| 22 | Muhammad Asyraaf Haikal Bin M. Haikal | 4:15.29 | — | 4:15.29 DNF — — — |
| 23 | Amirul Haziq | 4:19.59 | — | 4:19.59 4:54.94 — — — |
| 24 | Yousuf Sarfraz | 4:59.25 | — | 5:31.55 4:59.25 — — — |