| 1 | Ivan Lew Yi Wen (刘义文) | 38.21 | 41.13 | 43.71 44.48 40.52 39.16 38.21 |
| 2 | Amos Tay Swee Hui | 38.57 | 45.38 | 38.57 1:08.87 53.03 41.02 42.09 |
| 3 | Muhammad Hariz Bin Azizan | 42.94 | 48.30 | 42.94 50.97 44.95 48.97 1:09.56 |
| 4 | Muhammad Haziq Noreffendi | 45.89 | 49.91 | 45.89 50.04 46.33 55.70 53.36 |
| 5 | Muhammad Razin Bin Roslan | 45.57 | 52.44 | 49.31 52.47 59.59 45.57 55.55 |
| 6 | Siau Hong Da (蕭宏達) | 47.33 | 52.68 | 47.33 55.87 47.67 1:00.97 54.50 |
| 7 | Sulaiman Elias | 51.87 | 53.58 | 53.13 1:19.38 51.87 52.43 55.19 |
| 8 | Luqman Hakim Bin Hairil Azli | 46.07 | 54.71 | 46.07 1:01.38 51.40 58.10 54.63 |
| 9 | Ng Wai Hoe | 47.02 | 54.97 | 57.42 59.46 47.02 1:10.05 48.04 |
| 10 | Hoe Zi Yang | 49.25 | 56.37 | 49.25 56.88 1:02.23 50.01 DNF |
| 11 | Jared Tee Wei Jin | 52.79 | 57.25 | 56.28 56.47 1:04.05 59.01 52.79 |
| 12 | Lee Hoween | 51.61 | 57.95 | 1:03.32 1:04.58 56.62 53.92 51.61 |
| 13 | Ng Jian Je (方健泽) | 52.61 | 59.08 | 52.61 56.91 1:40.30 1:05.55 54.79 |
| 14 | William Gan Wei Ren (颜伟仁) | 49.26 | 59.47 | 55.51 1:04.78 49.26 1:04.72 58.19 |
| 15 | Soh Li Jin | 51.24 | 1:00.41 | 51.24 57.09 1:05.23 1:01.57 1:02.56 |
| 16 | Wei Yuen Teh | 51.14 | 1:02.53 | 1:18.18 51.14 1:01.75 1:01.38 1:04.45 |
| 17 | Tan Weiu Cheng | 1:02.08 | 1:04.80 | 1:02.18 1:03.78 1:02.08 1:08.45 1:14.69 |
| 18 | Kierren Lee | 1:02.87 | 1:04.95 | 1:05.60 1:02.87 1:32.76 1:05.67 1:03.57 |
| 19 | Muhammad Syahmi | 54.50 | 1:05.36 | 1:07.48 54.50 1:02.65 1:05.95 1:20.36 |
| 20 | Adam Wong Wei Jiang | 48.99 | 1:06.19 | 57.82 48.99 1:23.08 DNF 57.68 |
| 21 | Muhammad Ammar Aufa B. Rosman | 49.60 | 1:07.45 | 1:14.19 1:03.09 49.60 1:05.06 DNF |
| 22 | Ng Soon Lin | 56.59 | 1:09.15 | 1:18.63 1:07.91 56.59 1:00.92 1:50.42 |
| 23 | Tan Wei Ken | 1:01.46 | 1:09.86 | 1:15.22 1:13.23 1:01.46 1:11.99 1:04.35 |
| 24 | Ruben Lau Zhao Bin | 57.45 | 1:10.45 | 1:06.12 1:28.27 57.45 1:08.14 1:17.09 |
| 25 | Dale Palmares | 1:05.07 | 1:12.14 | 1:17.68 1:09.50 1:31.45 1:05.07 1:09.24 |
| 26 | Alvin Chow Mun Sing | 1:14.45 | 1:18.21 | 1:15.81 1:22.31 1:16.51 1:14.45 1:31.85 |
| 27 | Wong Hao Ran | 1:18.66 | 1:24.15 | 1:18.66 1:24.03 1:25.91 1:33.66 1:22.50 |
| 28 | Faris Izran Bin Mohd Zulhabri | 1:10.56 | 1:24.27 | 1:34.31 1:18.46 1:25.95 1:10.56 1:28.39 |
| 29 | Nabil Iskandar | 1:18.30 | 1:25.83 | 2:32.63 1:18.30 1:36.19 1:18.42 1:22.89 |
| 30 | Muhammad Din Bin Khairul Izman | 1:14.62 | DNF | 1:29.44 1:14.62 1:18.99 DNF DNF |
| 31 | Ahmad Hazim | 1:20.05 | — | 1:20.05 1:34.59 — — — |
| 32 | Aaron Ariff | 1:20.20 | — | 1:20.20 1:35.00 — — — |
| 33 | Jason Fong | 1:23.05 | — | 1:42.31 1:23.05 — — — |
| 34 | Hoo Jun Sheng | 1:34.32 | — | 1:59.06 1:34.32 — — — |
| 35 | Tun Muhammad Aqil Haikal Bin Jasmi | 1:35.04 | — | 2:08.86 1:35.04 — — — |
| 36 | Muhammad Rashid Elias | 1:35.14 | — | 2:46.12 1:35.14 — — — |
| 37 | Wan Ahmad Ziyad | 1:38.81 | — | 1:38.81 2:03.71 — — — |
| 38 | See Man Le | 1:43.29 | — | 1:43.29 DNF — — — |
| 39 | Talhah Bin Mohamad Shirajuddin | 1:44.04 | — | 1:53.05 1:44.04 — — — |
| 40 | Chu Kei Yuen | 1:47.59 | — | 2:24.10 1:47.59 — — — |
| 41 | Harith Akmal B. Mohd Helmi Rizal | 1:48.00 | — | 1:48.00 1:59.73 — — — |
| 42 | Arief Daniel Mohd Nizam | 1:50.01 | — | 1:50.01 3:40.72 — — — |
| 43 | Nabil Nur Aiman Bin Jasman | 1:57.77 | — | 1:57.77 2:52.75 — — — |
| 44 | Thor Jee Jun | 2:01.78 | — | 2:02.17 2:01.78 — — — |
| 45 | Lim Hung (林弘) | 2:06.75 | — | 2:47.38 2:06.75 — — — |
| 46 | Heng Zheng Ming (邱政铭) | 2:09.81 | — | 2:09.81 2:16.60 — — — |
| 47 | Mohd Firdaus Lamuham | 2:13.52 | — | 4:00.91 2:13.52 — — — |
| 48 | Abdul Rahman Elias | 2:24.24 | — | 2:32.98 2:24.24 — — — |
| 49 | Muawiya Ziyaad | 2:29.94 | — | 2:56.86 2:29.94 — — — |
| 50 | Tiwa Wei Yuan | 3:31.94 | — | 3:50.46 3:31.94 — — — |
| 51 | Sho Yong Quan | DNF | — | DNF DNF — — — |