| 1 | Neo Cuares | 49.90 | 53.60 | 54.49 49.91 49.90 1:01.02 56.40 |
| 2 | Leo Borromeo | 54.82 | 57.42 | 56.62 58.61 58.14 54.82 57.51 |
| 3 | Miguel Gonzaga | 53.54 | 59.51 | 1:01.60 59.79 53.54 1:01.53 57.22 |
| 4 | Dale Palmares | 1:00.19 | 1:02.87 | 1:03.40 1:04.29 1:00.19 1:00.97 1:04.23 |
| 5 | Brian Acuña | 1:05.08 | 1:13.55 | 1:05.08 1:19.16 1:06.48 DNF 1:15.02 |
| 6 | Kirby Jay Caragan | 1:15.47 | 1:20.77 | DNF 1:15.47 1:22.20 1:21.58 1:18.54 |
| 7 | Bea Alexandra Marie Flores | 1:19.12 | 1:42.19 | 1:41.85 2:01.82 1:47.65 1:19.12 1:37.06 |
| 8 | Chrisgel G. Tubianosa | 1:37.37 | 1:43.92 | 1:43.65 1:47.32 1:40.79 1:50.64 1:37.37 |
| 9 | Kyle Capiral | 1:37.28 | 1:44.06 | 2:00.80 1:45.97 1:37.28 1:43.11 1:43.09 |
| 10 | Zean Mariuss C. Algarme | 1:40.14 | 1:47.58 | DNF 1:46.66 1:53.42 1:42.67 1:40.14 |
| 11 | Savion Romeo Matula | 2:05.48 | 2:32.89 | 2:05.48 3:01.61 2:36.18 2:40.47 2:22.02 |
| 12 | Railee Diocampo | 3:03.57 | — | 3:03.57 3:20.82 — — — |
| 13 | Maria Florentina Isabel Perez | 3:30.91 | — | 3:43.92 3:30.91 — — — |