| 1 | Ayooluwa Samuel Dada | 45.45 | 49.60 | 1:06.02 49.92 45.45 49.62 49.27 |
| 2 | Brenton Angelo Lo Wong | 46.99 | 52.72 | 46.99 55.39 51.57 1:03.74 51.20 |
| 3 | Francis Yuel B. Merced | 50.39 | 53.74 | 1:10.14 51.93 50.66 50.39 58.64 |
| 4 | Karl Martin Montealto | 52.67 | 1:01.12 | 1:08.45 52.67 1:04.90 1:00.34 58.12 |
| 5 | Louie Jay Quibote | 57.79 | 1:04.36 | 1:12.21 1:09.05 1:02.18 57.79 1:01.85 |
| 6 | Yuji Yoshida | 1:00.72 | 1:07.22 | 1:17.31 1:00.72 1:06.74 1:05.76 1:09.17 |
| 7 | Dale Palmares | 1:06.85 | 1:20.52 | 1:22.52 1:21.97 1:20.87 1:06.85 1:18.71 |
| 8 | Roland Ababat | 1:10.55 | 1:21.40 | 1:20.80 1:10.55 1:21.69 1:21.71 1:25.37 |
| 9 | Iya Franzene L. Hufancia | 1:16.01 | 1:23.24 | 1:24.93 1:44.24 1:19.31 1:25.49 1:16.01 |
| 10 | Elijah Francis Jagonio | 1:28.23 | 1:37.85 | 1:54.03 1:45.73 1:28.23 1:37.35 1:30.46 |
| 11 | Jak Concepcion | 1:34.43 | 1:43.69 | 1:34.68 1:34.43 2:34.93 2:00.12 1:36.27 |
| 12 | Neil Joseph D. Prudencio | 1:32.35 | 1:50.89 | 1:50.31 1:32.35 1:53.40 1:48.95 1:59.96 |
| 13 | Gabriel Subion | 1:44.10 | 2:12.18 | 1:44.10 2:18.51 2:18.51 2:14.25 2:03.78 |
| 14 | Karl Aaron P. Ilano | 2:07.17 | — | 3:01.26 2:07.17 — — — |
| 15 | Joshua Gabriel N. Reyes | 2:11.76 | — | 2:15.42 2:11.76 — — — |
| 16 | Giovanni Sy | 2:47.89 | — | 4:02.45 2:47.89 — — — |
| 17 | Arnelio Manaca Mola | 2:48.94 | — | 2:48.94 DNF — — — |
| 18 | Jaren Matthew Pascua | 6:19.52 | — | 6:26.34 6:19.52 — — — |